PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06385.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 244aa    MW: 27195.1 Da    PI: 6.0458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06385.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1868116355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Rsa1.0_06385.1_g00003.1  68 YRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 116
                              9****888.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.3E-3667130IPR001471AP2/ERF domain
PROSITE profilePS5103223.57867124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3167125IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2068124IPR016177DNA-binding domain
CDDcd000186.48E-3268126No hitNo description
PfamPF008471.1E-1268116IPR001471AP2/ERF domain
PRINTSPR003671.2E-106879IPR001471AP2/ERF domain
PRINTSPR003671.2E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKKQINVGSS ATHHQEDNNA SVITTTTVAA VTSQKSWSSK RYLVQDNEAG GKRRKSDGGN  60
DNKNPISYRG VRKRSWGKWV SEIREPKKKS RIWLGTYPTA EMAARAHDVA ALAIKGNSGY  120
LNFPELSGLL PRPVSCSPKD IQAAAAKAAE VIWQEPVIDE KLANELSHSE LSTTQSSTSS  180
SFVFSSDTLD TLSTDKESNE ETVFDLPDLF TEGFMNHNDS FRYYESTTTW QLYGKDLEFA  240
WLDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1668124360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00414DAPTransfer from AT3G60490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651981.11e-147PREDICTED: ethylene-responsive transcription factor ERF035-like
SwissprotQ9M2101e-101ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLA0A078BVP41e-147A0A078BVP4_BRANA; BnaA07g18690D protein
STRINGBra003415.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.12e-93ERF family protein